Maize Transposable Element Database

TE class, sub-class, etc. listing as of 30-Apr-2017

Values to the right are the current number of entries in the database for that particular TE class, etc. The first number represents the total entries while the second number, if present, represents the unique entries.

Class Sub-class Order Super-family Family Sub-family
Class I 616 Subclass 1 616 DIRS 0 [RYD] DIRS 0
[RYN] Ngaro 0
[RYX] Unknown DIRS 0
[RYV] VIPER 0
LINE 32 [RII] I 0
[RIJ] Jockey 0
[RIL] L1 30 afeda 1
cin4 1
dager 1
edaej 1
ejoet 1
ekeje 1
etiti 1
gifife 1
gugyve 1
ijij 1
jikeuf 1
keneat 1
koajav 1
leijoh 1
loneok 1
naefe 1
nubo 1
nugimu 1
odoif 1
ogepy 1
okor 2
otiot 1
oviev 1
piivi 1
pyelum 1
rebaew 1
totyru 1
udag 1
yliij 1
[RIR] R2 0
[RIT] RTE 2 colonist 1
jare 1
[RIX] Unknown LINE 0
LTR 578 [RLB] Bel/Pao 0
[RLC] Copia 155 afad 1
agep 1
ahov 1
ajajog 1
ajipe 1
ajit 1
anar 1
atej 1
atop 1
bihar 1
bote 1
bovo 1
debeh 1
depuw 1
dijap 1
doke 2
dolovu 2
donuil 1
dugiab 1
ebel 5
ehahu 1
eninu 1
erev 1
fehod 1
finaij 1
fipi 1
fourf 1
fuvej 1
gekog 1
giepum 3
gilovu 1
giream 1
gudyeg 1
gugu 1
guvi 1
guwo 1
hago 1
hani 1
hera 1
hesa 1
hiri 1
homy 1
hopscotch 1
huta 1
huti 1
ibulaf 1
ijiret 2
iseb 1
janoov 1
japov 1
jelat 1
ji 16
kake 1
kuvi 2
labe 1
lafa 1
lusi 1
machiavelli 1
mauky 1
muekeh 1
naasuj 1
neha 1
nene 1
niki 1
nitat 1
nowuv 1
nuhan 1
ogiv 1
omud 1
onal 1
opie 17
owiit 1
pifo 1
pute 1
raider 2
rely 1
ruhi 1
sehoad 1
seko 1
seufyt 1
sofi 1
stonor 1
taname 1
tata 1
tatu 1
tiwe 1
tiwewi 1
totu 1
tufe 1
ubat 1
ubel 2
ubep 1
ugog 1
uhun 1
uloh 1
ulyg 1
urum 1
uwaf 1
victim 2
vodida 1
volo 1
votaed 1
vuijon 1
wamenu 1
waneer 1
wawo 1
wiwa 1
ydut 1
ypel 1
yrer 1
ytar 1
[RLE] ERV 0
[RLG] Gypsy 242 abiri 1
ahoru 1
aneas 1
anysaf 2
apil 2
awuhe 1
bavav 1
bobeg 1
bobobo 1
bogu 2
boha 1
boja 1
bomevy 1
bosohe 8
bowuow 1
bygum 1
cinful-zeon 41
CRM1 3
CRM4 2
dabe 1
dadeir 1
dagaf 3
ekoj 1
epohi 1
ewib 2
ewiut 1
ewog 1
fege 1
flip 7
fuved 1
gati 1
gofi 1
grande 4
guhis 1
guwiot 1
gylu 1
gyma 6
gyte 1
hooni 1
huck 20
hute 1
ijaat 1
ikal 1
ivuk 1
iwim 1
jaws 2
kase 1
kise 1
kubi 2
labu 1
laiwa 1
lata 1
lise 1
loba 1
lowy 1
lute 2
lyruom 1
lywy 1
magellan 1
maro 1
moorud 1
mufeub 1
mywur 1
naijaj 1
nakovu 1
nasi 1
nobe 1
nopip 1
notu 1
oguod 1
ojam 1
ojav 1
ojokat 1
okopam 1
olepo 1
omoha 1
ovamef 1
oveah 1
ovikoh 1
pagof 1
pebi 1
piube 1
prem1 10
puck 4
reina 1
riiryl 1
rimaar 1
rowi 1
rufefu 1
ruugu 1
satulo 1
sawujo 1
seuwe 1
soger 1
sokiit 1
sowu 1
suda 1
sywu 1
taro 1
tekay 2
tituer 1
tuku 1
ubid 1
udav 1
udokup 1
ufonah 1
ugano 1
ulik 1
umojev 1
uper 1
upus 1
ures 1
usif 1
usuf 1
uvet 1
uwew 1
uwum 3
uwuw 1
vufi 1
waepo 1
weaniv 1
weki 1
wemu 1
witi 1
wuwe 2
wyly 1
xilon-diguus 3
yfages 1
ytub 1
yvoj 1
ywuv 1
ywyt 1
[RLR] Retrovirus 0
[RLX] Unknown LTR 181 adun 1
afeke 1
afuv 1
ajeb 1
alaw 1
anim 1
arar 1
avahi 1
baha 1
baso 1
bawigu 1
beboso 1
beby 1
bene 1
beva 1
biwa 1
bori 1
bosovu 1
bs1 2
buire 1
bula 1
bumy 1
CRM2 1
CRM3 1
dady 1
daju 1
dala 1
defub 1
demo 1
doba 1
efaw 1
eguh 1
elalal 1
emuh 1
epiil 1
epom 1
etin 1
etug 1
ewigyw 1
ewot 1
ewuof 1
fajy 1
fanuab 1
fara 1
fate 1
fosu 2
gate 1
geta 1
gotur 1
guafa 1
guali 1
gufa 1
habu 1
halo 1
hiimam 1
hoda 1
hutu 1
ifab 1
ilofaw 1
ilyl 1
iwik 1
jakek 1
jeli 2
joemon 1
jube 1
jupek 1
juta 1
kahoba 1
kahowu 1
kaise 1
kawivo 1
kinosi 1
kupu 1
lamyab 1
lenu 1
leso 1
loukuv 1
luteja 1
lyna 1
mafigi 1
mafogo 1
mako 1
maono 1
mewu 1
mibaab 1
mijuw 1
milt 4
miva 1
mopin 3
mulaf 1
muusi 1
nabu 2
naiba 1
nakuuv 1
name 1
nana 1
naseup 1
neafu 1
neteut 1
nisow 1
niypo 1
nyjuvy 2
odip 1
ohag 1
ojah 1
okoj 1
okur 1
onub 1
osed 1
ovev 1
oviil 1
oviis 1
ovys 1
oweiw 1
owume 1
panen 1
petopi 1
pibo 1
poarow 1
pope 1
raga 2
rijuep 1
ruda 3
rulo 1
ruwi 1
saahol 1
sari 1
sego 1
sela 1
sido 1
small 2
soefes 1
teki 1
teuta 1
tisy 1
tojena 1
toro 1
tuteh 1
tywo 1
ubow 1
ugymos 1
ujinas 1
ukov 1
ulon 1
uluil 1
urogor 1
utar 1
uvis 1
uwub 1
vafim 1
vaofen 1
vedi 1
vegu 1
vora 1
vufe 1
vuna 1
vusu 1
wawu 1
wihov 1
wiolus 1
wiru 1
wugaab 1
wuywu 1
yemi 1
yraj 1
yreud 1
ywely 1
PLE 0 [RPP] Penelope 0
[RPX] Unknown PLE 0
SINE 6 [RSS] 5S 0
[RSL] 7SL 0
[RST] tRNA 6 AU 1
ZmSINE1 1
ZmSINE2.1 1
ZmSINE2.2 1
ZmSINE2.3 1
ZmSINE3 1
[RSX] Unknown SINE 0
Unknown retrotransposon 0 [RXX] Unknown retrotransposon 0
Class II 908 Subclass 1 892 Crypton 0 [DYC] Crypton 0
[DYX] Unknown Crypton 0
TIR 892 [DTC] CACTA 126
[DTA] hAT 387
[DTE] Merlin 0
[DTM] Mutator 138 Zm00030 1
Zm00118 1
Zm00197 1
Zm00257 1
Zm00266 1
Zm00268 1
Zm00299 1
Zm00346 1
Zm00364 1
Zm00460 1
Zm00473 1
Zm00555 1
Zm00614 1
Zm00628 1
Zm00665 1
Zm00673 1
Zm00743 1
Zm00754 1
Zm00796 1
Zm00800 1
Zm00850 1
Zm00851 1
Zm00884 1
Zm01310 1
Zm01468 1
Zm01472 1
Zm01654 1
Zm01980 1
Zm02039 1
Zm02066 1
Zm02084 1
Zm02117 1
Zm02275 1
Zm02569 1
Zm02656 1
Zm02661 1
Zm02703 1
Zm02731 1
Zm02785 1
Zm02947 1
Zm03238 1
Zm03556 1
Zm03723 1
Zm03788 1
Zm04488 1
Zm04817 1
Zm05382 1
Zm05901 1
Zm05916 1
Zm06094 1
Zm06136 1
Zm06396 1
Zm06455 1
Zm06456 1
Zm06948 1
Zm07209 1
Zm08014 1
Zm08178 1
Zm08412 1
Zm08670 1
Zm08959 1
Zm09546 1
Zm09664 1
Zm09941 1
Zm10163 1
Zm10271 1
Zm10339 1
Zm10582IC 1
Zm10723 1
Zm11868 1
Zm12110 1
Zm12576 1
Zm12720 1
Zm13526 1
Zm13585 1
Zm14108 1
Zm14377 1
Zm14961 1
Zm15241 1
Zm15648 1
Zm15816 1
Zm16884 1
Zm17123 1
Zm17242 1
Zm17860 1
Zm17880 1
Zm18028 1
Zm18059 1
Zm18165 1
Zm18873 1
Zm19358 1
Zm19831 1
Zm19950 1
Zm20218 1
Zm20301 1
Zm20615 1
Zm21089 1
Zm21197 1
Zm21757 1
Zm22986 1
Zm23554 1
Zm25163 1
Zm25481IC 1
Zm25996 1
Zm26908 1
Zm27731 1
Zm27984 1
Zm28013 1
Zm28681 1
Zm29517 1
Zm30706 1
Zm31138 1
Zm32353 1
Zm32512 1
Zm33202 1
Zm33203 1
Zm33205 1
Zm33206 1
Zm33207 1
Zm33208 1
Zm33209 1
Zm33210IC 1
Zm33211 1
Zm33212 1
Zm33213 1
Zm33216 1
Zm33220 1
Zm33221 1
Zm33222 1
Zm33223 1
Zm33224 1
Zm33225IC 1
Zm33226 1
Zm33227IC 1
Zm33228 1
Zm33229 1
Zm33233 1
Zm33234 1
[DTP] P 0
[DTH] PIF/Harbinger 182
[DTB] PiggyBac 0
[DTT] Tc1/Mariner 59
[DTR] Transib 0
[DTX] Unknown TIR 0
Unknown DNA transposon 0 [DXX] Unknown DNA transposon 0
Subclass 2 16 Helitron 16 [DHH] Helitron 16 Hip1 9
Hip2 3
Hip5 1
Hip6 2
Hip7 1
[DHX] Unknown Helitron 0
Maverick 0 [DMM] Maverick 0
[DMX] Unknown Maverick 0